Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs34148924 chr16:1735671 T/C 0 174 25.53 18.75 2.93 KM Plot
PCPG rs34161055 chr2:242514152 A/C 2.59E-5 177 25.87 27.62 20.2 KM Plot
PCPG rs34162236 chr8:121523308 C/T 4.11E-6 178 27.23 25 19.87 KM Plot
PCPG rs34181942 chr16:71585284 C/T 0.000141 173 24.85 31.47 15.82 KM Plot
PCPG rs34215281 chr16:1772008 C/G 2.51E-11 171 25.67 18.75 4.52 KM Plot
PCPG rs34224335 chr1:150766085 AT/A 7.34E-5 171 110.77 17.93 25.67 KM Plot
PCPG rs34231182 chr14:74626964 G/A 3.31E-10 175 25.4 26.92 7.4 KM Plot
PCPG rs34238610 chr3:53026480 A/T 6.73E-6 176 25.28 26.05 11.78 KM Plot
PCPG rs34241708 chr16:1767922 A/G 1.76E-11 174 25.67 18.2 4.52 KM Plot
PCPG rs34244302 chr3:53102236 C/G 8.98E-6 175 25.08 25.53 11.78 KM Plot
PCPG rs34256009 chr15:101859419 C/T 0.000287 170 24.77 28.03 10.43 KM Plot
PCPG rs34256864 chr2:242560817 T/C 3.24E-5 174 25.2 26.47 20.28 KM Plot
PCPG rs34264400 chr16:1759757 T/G 0 177 25.53 24.1 2.93 KM Plot
PCPG rs34270446 chr2:242561511 G/A 3.52E-5 173 25.2 25.67 20.28 KM Plot
PCPG rs34272502 chr16:89949000 G/C 0.000157 176 25.77 21.5 36.37 KM Plot